Distinct electrostatic frequency tuning rates for amide I and amide I′ vibrations
Journal of Chemical Physics, 2021, Volume 155, 195101.
Amide I spectroscopy probes the backbone C=O stretch vibrations of peptides and proteins. Amide I spectra are often collected in deuterated water (D2O) since this provides a cleaner background in the amide I frequency range; such data are often referred to as amide I & PRIME; spectra since deuteration induces changes in the mode structure, including a roughly & SIM;10 cm(-1) redshift. For biological samples, however, deuteration is often not possible. As amide I frequency maps are increasingly applied to quantitative protein structural analysis, this raises the interesting challenge of drawing direct connections between amide I and amide I & PRIME; data. We here analyze amide I and amide I & PRIME; peak frequencies for a series of dipeptides and related compounds. Changes in protonation state induce large electrostatic shifts in the peak frequencies, allowing us to amass a sizable library of data points for direct amide I/amide I & PRIME; comparison. While we find an excellent linear correlation between amide I and amide I & PRIME; peak frequencies, the deuteration-induced shift is smaller for more red-shifted vibrations, indicating different electrostatic tuning rates in the two solvents. H2O/D2O shifts were negligible for proline-containing dipeptides that lack exchangeable amide hydrogens, indicating that the intrinsic properties of the solvent do not strongly influence the H/D shift. These findings indicate that the distinct tuning rates observed for the two vibrations arise from modifications to the intrinsic properties of the amide bond and provide (at least for solvated dipeptides) a simple, linear "map " for translating between amide I and amide I & PRIME; frequencies. |
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